Comparative transcript profiling of gene expression between seedless Ponkan mandarin and its seedy wild type during floral organ development by suppression subtractive hybridization and cDNA microarray
Identifieur interne : 001373 ( Main/Exploration ); précédent : 001372; suivant : 001374Comparative transcript profiling of gene expression between seedless Ponkan mandarin and its seedy wild type during floral organ development by suppression subtractive hybridization and cDNA microarray
Auteurs : Wen-Ming Qiu [République populaire de Chine] ; An-Dan Zhu [République populaire de Chine] ; Yao Wang [République populaire de Chine] ; Li-Jun Chai [République populaire de Chine] ; Xiao-Xia Ge [République populaire de Chine] ; Xiu-Xin Deng [République populaire de Chine] ; Wen-Wu Guo [République populaire de Chine]Source :
- BMC Genomics [ 1471-2164 ] ; 2012.
Abstract
Seedlessness is an important agronomic trait for citrus, and male sterility (MS) is one main cause of seedless citrus fruit. However, the molecular mechanism of citrus seedlessness remained not well explored.
An integrative strategy combining suppression subtractive hybridization (SSH) library with cDNA microarray was employed to study the underlying mechanism of seedlessness of a Ponkan mandarin seedless mutant (
Our research highlighted some candidate pathways that participated in the citrus male gametophyte development and could be beneficial for seedless citrus breeding in the future.
Url:
DOI: 10.1186/1471-2164-13-397
PubMed: 22897898
PubMed Central: 3495689
Affiliations:
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National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, An Dan" sort="Zhu, An Dan" uniqKey="Zhu A" first="An-Dan" last="Zhu">An-Dan Zhu</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yao" sort="Wang, Yao" uniqKey="Wang Y" first="Yao" last="Wang">Yao Wang</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author><author><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author><author><name sortKey="Ge, Xiao Xia" sort="Ge, Xiao Xia" uniqKey="Ge X" first="Xiao-Xia" last="Ge">Xiao-Xia Ge</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author><author><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name><affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education); National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070</wicri:regionArea><wicri:noRegion>430070</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Seedlessness is an important agronomic trait for citrus, and male sterility (MS) is one main cause of seedless citrus fruit. However, the molecular mechanism of citrus seedlessness remained not well explored.</p></sec><sec><title>Results</title><p>An integrative strategy combining suppression subtractive hybridization (SSH) library with cDNA microarray was employed to study the underlying mechanism of seedlessness of a Ponkan mandarin seedless mutant (<italic>Citrus reticulata</italic> Blanco). Screening with custom microarray, a total of 279 differentially expressed clones were identified, and 133 unigenes (43 contigs and 90 singletons) were obtained after sequencing. Gene Ontology (GO) distribution based on biological process suggested that the majority of differential genes are involved in metabolic process and respond to stimulus and regulation of biology process; based on molecular function they function as DNA/RNA binding or have catalytic activity and oxidoreductase activity. A gene encoding male sterility-like protein was highly up-regulated in the seedless mutant compared with the wild type, while several transcription factors (TFs) such as AP2/EREBP, MYB, WRKY, NAC and C2C2-GATA zinc-finger domain TFs were down-regulated.</p></sec><sec><title>Conclusion</title><p>Our research highlighted some candidate pathways that participated in the citrus male gametophyte development and could be beneficial for seedless citrus breeding in the future.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Varoquaux, F" uniqKey="Varoquaux F">F Varoquaux</name></author><author><name sortKey="Blanvillain, R" uniqKey="Blanvillain R">R Blanvillain</name></author><author><name sortKey="Delseny, M" uniqKey="Delseny M">M Delseny</name></author><author><name sortKey="Gallois, P" uniqKey="Gallois P">P Gallois</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gillaspy, G" uniqKey="Gillaspy 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X" uniqKey="Zhao X">X Zhao</name></author><author><name sortKey="Wang, Fx" uniqKey="Wang F">FX Wang</name></author><author><name sortKey="Li, Z" uniqKey="Li Z">Z Li</name></author><author><name sortKey="Wang, Yh" uniqKey="Wang Y">YH Wang</name></author><author><name sortKey="Ma, Sl" uniqKey="Ma S">SL Ma</name></author><author><name sortKey="Tao, Jp" uniqKey="Tao J">JP Tao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, Yh" uniqKey="Yang Y">YH Yang</name></author><author><name sortKey="Dudoit, S" uniqKey="Dudoit S">S Dudoit</name></author><author><name sortKey="Luu, P" uniqKey="Luu P">P Luu</name></author><author><name sortKey="Lin, Dm" uniqKey="Lin D">DM Lin</name></author><author><name sortKey="Peng, V" uniqKey="Peng V">V Peng</name></author><author><name sortKey="Ngai, J" uniqKey="Ngai J">J Ngai</name></author><author><name sortKey="Speed, Tp" uniqKey="Speed T">TP Speed</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, X" uniqKey="Huang X">X Huang</name></author><author><name sortKey="Madan, A" uniqKey="Madan A">A Madan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schmid, R" uniqKey="Schmid R">R Schmid</name></author><author><name sortKey="Blaxter, Ml" uniqKey="Blaxter M">ML Blaxter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eisen, Mb" uniqKey="Eisen M">MB Eisen</name></author><author><name sortKey="Spellman, Pt" uniqKey="Spellman P">PT Spellman</name></author><author><name sortKey="Brown, Po" uniqKey="Brown P">PO Brown</name></author><author><name sortKey="Botstein, D" uniqKey="Botstein D">D Botstein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, Q" uniqKey="Liu Q">Q Liu</name></author><author><name sortKey="Xu, J" uniqKey="Xu J">J Xu</name></author><author><name sortKey="Liu, Yz" uniqKey="Liu Y">YZ Liu</name></author><author><name sortKey="Zhao, Xl" uniqKey="Zhao X">XL Zhao</name></author><author><name sortKey="Deng, Xx" uniqKey="Deng X">XX Deng</name></author><author><name sortKey="Guo, Ll" uniqKey="Guo L">LL Guo</name></author><author><name sortKey="Gu, Jq" uniqKey="Gu J">JQ Gu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Qiu, Wen Ming" sort="Qiu, Wen Ming" uniqKey="Qiu W" first="Wen-Ming" last="Qiu">Wen-Ming Qiu</name></noRegion><name sortKey="Chai, Li Jun" sort="Chai, Li Jun" uniqKey="Chai L" first="Li-Jun" last="Chai">Li-Jun Chai</name><name sortKey="Deng, Xiu Xin" sort="Deng, Xiu Xin" uniqKey="Deng X" first="Xiu-Xin" last="Deng">Xiu-Xin Deng</name><name sortKey="Ge, Xiao Xia" sort="Ge, Xiao Xia" uniqKey="Ge X" first="Xiao-Xia" last="Ge">Xiao-Xia Ge</name><name sortKey="Guo, Wen Wu" sort="Guo, Wen Wu" uniqKey="Guo W" first="Wen-Wu" last="Guo">Wen-Wu Guo</name><name sortKey="Wang, Yao" sort="Wang, Yao" uniqKey="Wang Y" first="Yao" last="Wang">Yao Wang</name><name sortKey="Zhu, An Dan" sort="Zhu, An Dan" uniqKey="Zhu A" first="An-Dan" last="Zhu">An-Dan Zhu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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